Detailed information of SNP:
|
SNP ID:
sf1124849055(Gbrowse)
Chromosome: chr11 Position: 24849055 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 77.68% | 22.32% |
| All Indica | 794 | 92.44% | 7.56% |
| All Japonica | 494 | 55.06% | 44.94% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 372 | 90.05% | 9.95% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 333 | 40.54% | 59.46% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124849055 | T->C | INTERGENIC | None |