Detailed information of SNP:
|
SNP ID:
sf1124856388(Gbrowse)
Chromosome: chr11 Position: 24856388 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 61.79% | 38.21% |
| All Indica | 788 | 46.95% | 53.05% |
| All Japonica | 490 | 84.29% | 15.71% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 366 | 50.82% | 49.18% |
| Indica II | 211 | 64.93% | 35.07% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 332 | 94.58% | 5.42% |
| Tropical Japonica | 93 | 47.31% | 52.69% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124856388 | T->A | LOC_Os11g42070(LOC_Os11g42070.2) | Non-Synonymous SNP |
| sf1124856388 | T->A | LOC_Os11g42070(LOC_Os11g42070.1) | Non-Synonymous SNP |