Detailed information of SNP:
|
SNP ID:
sf1124857167(Gbrowse)
Chromosome: chr11 Position: 24857167 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 57.90% | 42.10% |
| All Indica | 781 | 80.41% | 19.59% |
| All Japonica | 492 | 23.37% | 76.63% |
| Aus | 64 | 50.00% | 50.00% |
| Indica I | 361 | 72.02% | 27.98% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 333 | 10.51% | 89.49% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124857167 | A->G | LOC_Os11g42070(LOC_Os11g42070.2) | Synonymous |
| sf1124857167 | A->G | LOC_Os11g42070(LOC_Os11g42070.1) | Synonymous |