Detailed information of SNP:
|
SNP ID:
sf1124875612(Gbrowse)
Chromosome: chr11 Position: 24875612 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 84.51% | 15.49% |
| All Indica | 773 | 76.84% | 23.16% |
| All Japonica | 492 | 94.51% | 5.49% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 357 | 75.63% | 24.37% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 205 | 69.27% | 30.73% |
| Temperate Japonica | 332 | 97.29% | 2.71% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124875612 | A->G | LOC_Os11g42090(LOC_Os11g42090.1) | INTRON |