Detailed information of SNP:
|
SNP ID:
sf1124875635(Gbrowse)
Chromosome: chr11 Position: 24875635 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 85.24% | 14.76% |
| All Indica | 779 | 77.79% | 22.21% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 363 | 76.86% | 23.14% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 206 | 70.39% | 29.61% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124875635 | C->T | LOC_Os11g42090(LOC_Os11g42090.1) | INTRON |