Detailed information of SNP:
|
SNP ID:
sf1124877166(Gbrowse)
Chromosome: chr11 Position: 24877166 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 51.63% | 48.37% |
| All Indica | 766 | 33.29% | 66.71% |
| All Japonica | 494 | 77.13% | 22.87% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 361 | 28.81% | 71.19% |
| Indica II | 207 | 25.12% | 74.88% |
| Indica Intermediate | 198 | 50.00% | 50.00% |
| Temperate Japonica | 332 | 76.20% | 23.80% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124877166 | C->T | LOC_Os11g42090(LOC_Os11g42090.1) | Non-Synonymous SNP |