Detailed information of SNP:
|
SNP ID:
sf1124879626(Gbrowse)
Chromosome: chr11 Position: 24879626 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 94.98% | 5.02% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124879626 | A->G | INTERGENIC | None |