Detailed information of SNP:
|
SNP ID:
sf1124898062(Gbrowse)
Chromosome: chr11 Position: 24898062 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 65.82% | 34.18% |
| All Indica | 793 | 80.71% | 19.29% |
| All Japonica | 495 | 43.43% | 56.57% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 333 | 23.72% | 76.28% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124898062 | T->C | INTERGENIC | None |