Detailed information of SNP:
|
SNP ID:
sf1124919245(Gbrowse)
Chromosome: chr11 Position: 24919245 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.83% | 31.17% |
| All Indica | 798 | 53.51% | 46.49% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 21.43% | 78.57% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124919245 | G->A | INTERGENIC | None |