Detailed information of SNP:
|
SNP ID:
sf1124924387(Gbrowse)
Chromosome: chr11 Position: 24924387 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 83.45% | 16.55% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 497 | 69.42% | 30.58% |
| Aus | 57 | 61.40% | 38.60% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 72.24% | 27.76% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124924387 | C->G | INTERGENIC | None |