Detailed information of SNP:
|
SNP ID:
sf1124925418(Gbrowse)
Chromosome: chr11 Position: 24925418 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.02% | 45.98% |
| All Indica | 799 | 52.94% | 47.06% |
| All Japonica | 497 | 61.17% | 38.83% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 71.34% | 28.66% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124925418 | A->C | INTERGENIC | None |