Detailed information of SNP:
|
SNP ID:
sf1124926428(Gbrowse)
Chromosome: chr11 Position: 24926428 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 59.48% | 40.52% |
| All Indica | 797 | 65.50% | 34.50% |
| All Japonica | 478 | 51.67% | 48.33% |
| Aus | 62 | 51.61% | 48.39% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 332 | 55.42% | 44.58% |
| Tropical Japonica | 80 | 63.75% | 36.25% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124926428 | T->C | INTERGENIC | None |