Detailed information of SNP:
|
SNP ID:
sf1124926610(Gbrowse)
Chromosome: chr11 Position: 24926610 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1348 | 84.12% | 15.88% |
| All Indica | 735 | 76.33% | 23.67% |
| All Japonica | 493 | 93.10% | 6.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 78.45% | 21.55% |
| Indica II | 200 | 83.50% | 16.50% |
| Indica Intermediate | 187 | 64.71% | 35.29% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124926610 | A->G | INTERGENIC | None |