Detailed information of SNP:
|
SNP ID:
sf1124926946(Gbrowse)
Chromosome: chr11 Position: 24926946 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.87% | 48.13% |
| All Indica | 798 | 25.06% | 74.94% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 375 | 14.40% | 85.60% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124926946 | T->C | INTERGENIC | None |