Detailed information of SNP:
|
SNP ID:
sf1124927316(Gbrowse)
Chromosome: chr11 Position: 24927316 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.16% | 17.84% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 496 | 69.15% | 30.85% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 72.24% | 27.76% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124927316 | T->A | INTERGENIC | None |