Detailed information of SNP:
|
SNP ID:
sf1124927667(Gbrowse)
Chromosome: chr11 Position: 24927667 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 82.51% | 17.49% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 69.22% | 30.78% |
| Aus | 61 | 57.38% | 42.62% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124927667 | C->T | INTERGENIC | None |