Detailed information of SNP:
|
SNP ID:
sf1124935205(Gbrowse)
Chromosome: chr11 Position: 24935205 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.27% | 19.73% |
| All Indica | 799 | 66.71% | 33.29% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124935205 | G->T | INTERGENIC | None |