Detailed information of SNP:
|
SNP ID:
sf1124952274(Gbrowse)
Chromosome: chr11 Position: 24952274 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 50.65% | 49.35% |
| All Indica | 773 | 44.76% | 55.24% |
| All Japonica | 497 | 57.95% | 42.05% |
| Aus | 56 | 42.86% | 57.14% |
| Indica I | 374 | 58.02% | 41.98% |
| Indica II | 209 | 29.67% | 70.33% |
| Indica Intermediate | 190 | 35.26% | 64.74% |
| Temperate Japonica | 335 | 44.18% | 55.82% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124952274 | A->G | INTERGENIC | None |