Detailed information of SNP:
|
SNP ID:
sf1124952304(Gbrowse)
Chromosome: chr11 Position: 24952304 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 83.77% | 16.23% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 495 | 71.31% | 28.69% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124952304 | C->T | INTERGENIC | None |