Detailed information of SNP:
|
SNP ID:
sf1124952860(Gbrowse)
Chromosome: chr11 Position: 24952860 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 92.68% | 7.32% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 477 | 94.34% | 5.66% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 76 | 73.68% | 26.32% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124952860 | C->T | INTERGENIC | None |