Detailed information of SNP:
|
SNP ID:
sf1124954569(Gbrowse)
Chromosome: chr11 Position: 24954569 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.49% | 9.51% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124954569 | G->T | INTERGENIC | None |