Detailed information of SNP:
|
SNP ID:
sf1124959105(Gbrowse)
Chromosome: chr11 Position: 24959105 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 90.33% | 9.67% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 496 | 93.15% | 6.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124959105 | C->T | LOC_Os11g42200(LOC_Os11g42200.1) | Non-Synonymous SNP |