Detailed information of SNP:
|
SNP ID:
sf1124963644(Gbrowse)
Chromosome: chr11 Position: 24963644 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 76.29% | 23.71% |
| All Indica | 799 | 71.59% | 28.41% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 74.33% | 25.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124963644 | G->A | INTERGENIC | None |