Detailed information of SNP:
|
SNP ID:
sf1124966225(Gbrowse)
Chromosome: chr11 Position: 24966225 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.63% | 20.37% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 52.31% | 47.69% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124966225 | G->A | INTERGENIC | None |