Detailed information of SNP:
|
SNP ID:
sf1124966283(Gbrowse)
Chromosome: chr11 Position: 24966283 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.66% | 20.34% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 51.91% | 48.09% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124966283 | C->T | LOC_Os11g42220(LOC_Os11g42220.1) | UTR_5_PRIME |