Detailed information of SNP:
|
SNP ID:
sf1124967336(Gbrowse)
Chromosome: chr11 Position: 24967336 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 75.90% | 24.10% |
| All Indica | 797 | 70.39% | 29.61% |
| All Japonica | 496 | 81.65% | 18.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124967336 | G->A | LOC_Os11g42220(LOC_Os11g42220.1) | Synonymous |