Detailed information of SNP:
|
SNP ID:
sf1124968410(Gbrowse)
Chromosome: chr11 Position: 24968410 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.16% | 34.84% |
| All Indica | 799 | 68.59% | 31.41% |
| All Japonica | 497 | 59.96% | 40.04% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 68.53% | 31.47% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 45.67% | 54.33% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124968410 | T->G | LOC_Os11g42220(LOC_Os11g42220.1) | UTR_3_PRIME |