Detailed information of SNP:
|
SNP ID:
sf1124968795(Gbrowse)
Chromosome: chr11 Position: 24968795 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 71.32% | 28.68% |
| All Indica | 797 | 63.11% | 36.89% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124968795 | G->T | INTERGENIC | None |