Detailed information of SNP:
SNP ID:
sf1124973312(Gbrowse)
Chromosome: chr11 Position: 24973312 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1321 | 96.59% | 3.41% |
All Indica | 703 | 93.74% | 6.26% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 294 | 89.80% | 10.20% |
Indica II | 203 | 96.55% | 3.45% |
Indica Intermediate | 206 | 96.60% | 3.40% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1124973312 | C->T | INTERGENIC | None |