Detailed information of SNP:
|
SNP ID:
sf1124974092(Gbrowse)
Chromosome: chr11 Position: 24974092 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 96.31% | 3.69% |
| All Indica | 791 | 97.35% | 2.65% |
| All Japonica | 495 | 95.35% | 4.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124974092 | G->A | INTERGENIC | None |