Detailed information of SNP:
|
SNP ID:
sf1124977608(Gbrowse)
Chromosome: chr11 Position: 24977608 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.41% | 31.59% |
| All Indica | 798 | 66.17% | 33.83% |
| All Japonica | 497 | 71.43% | 28.57% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124977608 | C->T | INTERGENIC | None |