Detailed information of SNP:
|
SNP ID:
sf1124999816(Gbrowse)
Chromosome: chr11 Position: 24999816 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.11% | 28.89% |
| All Indica | 799 | 51.31% | 48.69% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 43.73% | 56.27% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124999816 | G->A | INTERGENIC | None |