Detailed information of SNP:
|
SNP ID:
sf1125002020(Gbrowse)
Chromosome: chr11 Position: 25002020 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 59.30% | 40.70% |
| All Indica | 797 | 39.02% | 60.98% |
| All Japonica | 483 | 89.23% | 10.77% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 38.07% | 61.93% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 324 | 95.99% | 4.01% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125002020 | C->G | INTERGENIC | None |