Detailed information of SNP:
|
SNP ID:
sf1125002134(Gbrowse)
Chromosome: chr11 Position: 25002134 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.09% | 6.91% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125002134 | C->T | INTERGENIC | None |