Detailed information of SNP:
|
SNP ID:
sf1125004071(Gbrowse)
Chromosome: chr11 Position: 25004071 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 73.23% | 26.77% |
| All Indica | 799 | 65.71% | 34.29% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125004071 | A->G | INTERGENIC | None |