Detailed information of SNP:
|
SNP ID:
sf1125004687(Gbrowse)
Chromosome: chr11 Position: 25004687 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 77.10% | 22.90% |
| All Indica | 799 | 67.58% | 32.42% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125004687 | T->C | INTERGENIC | None |