Detailed information of SNP:
|
SNP ID:
sf1125004753(Gbrowse)
Chromosome: chr11 Position: 25004753 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 77.45% | 22.55% |
| All Indica | 799 | 67.33% | 32.67% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125004753 | T->G | INTERGENIC | None |