Detailed information of SNP:
|
SNP ID:
sf1125004880(Gbrowse)
Chromosome: chr11 Position: 25004880 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 90.84% | 9.16% |
| All Indica | 793 | 89.16% | 10.84% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 205 | 74.15% | 25.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125004880 | C->T | INTERGENIC | None |