Detailed information of SNP:
|
SNP ID:
sf1125005495(Gbrowse)
Chromosome: chr11 Position: 25005495 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.47% | 10.53% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125005495 | C->T | INTERGENIC | None |