Detailed information of SNP:
|
SNP ID:
sf1125007383(Gbrowse)
Chromosome: chr11 Position: 25007383 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 90.93% | 9.07% |
| All Indica | 785 | 89.55% | 10.45% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 198 | 75.25% | 24.75% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125007383 | C->T | INTERGENIC | None |