Detailed information of SNP:
|
SNP ID:
sf1125008605(Gbrowse)
Chromosome: chr11 Position: 25008605 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 97.46% | 2.54% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125008605 | G->C | LOC_Os11g42300(LOC_Os11g42300.1) | Non-Synonymous SNP |