Detailed information of SNP:
|
SNP ID:
sf1125009267(Gbrowse)
Chromosome: chr11 Position: 25009267 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 69.99% | 30.01% |
| All Indica | 790 | 66.33% | 33.67% |
| All Japonica | 494 | 80.97% | 19.03% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 370 | 82.70% | 17.30% |
| Indica II | 211 | 73.93% | 26.07% |
| Indica Intermediate | 209 | 29.67% | 70.33% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 91 | 20.88% | 79.12% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125009267 | A->C | LOC_Os11g42300(LOC_Os11g42300.1) | Synonymous |