Detailed information of SNP:
|
SNP ID:
sf1125009467(Gbrowse)
Chromosome: chr11 Position: 25009467 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 77.81% | 22.19% |
| All Indica | 799 | 68.46% | 31.54% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125009467 | A->C | LOC_Os11g42300(LOC_Os11g42300.1) | Non-Synonymous SNP |