Detailed information of SNP:
|
SNP ID:
sf1125009520(Gbrowse)
Chromosome: chr11 Position: 25009520 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 77.66% | 22.34% |
| All Indica | 799 | 68.09% | 31.91% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125009520 | A->G | INTERGENIC | None |