Detailed information of SNP:
|
SNP ID:
sf1125010114(Gbrowse)
Chromosome: chr11 Position: 25010114 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.13% | 33.87% |
| All Indica | 799 | 65.33% | 34.67% |
| All Japonica | 495 | 71.31% | 28.69% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 48.80% | 51.20% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 83.58% | 16.42% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125010114 | A->G | INTERGENIC | None |