Detailed information of SNP:
|
SNP ID:
sf1125012771(Gbrowse)
Chromosome: chr11 Position: 25012771 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 94.65% | 5.35% |
| All Indica | 781 | 91.04% | 8.96% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 199 | 83.92% | 16.08% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125012771 | A->C | INTERGENIC | None |