Detailed information of SNP:
|
SNP ID:
sf1125016206(Gbrowse)
Chromosome: chr11 Position: 25016206 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 97.87% | 2.13% |
| All Indica | 795 | 98.99% | 1.01% |
| All Japonica | 488 | 95.90% | 4.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 86 | 86.05% | 13.95% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125016206 | G->A | LOC_Os11g42320(LOC_Os11g42320.1) | Non-Synonymous SNP |