Detailed information of SNP:
|
SNP ID:
sf1125017448(Gbrowse)
Chromosome: chr11 Position: 25017448 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 76.56% | 23.44% |
| All Indica | 719 | 92.63% | 7.37% |
| All Japonica | 480 | 57.29% | 42.71% |
| Aus | 60 | 58.33% | 41.67% |
| Indica I | 348 | 93.97% | 6.03% |
| Indica II | 189 | 93.12% | 6.88% |
| Indica Intermediate | 182 | 89.56% | 10.44% |
| Temperate Japonica | 331 | 58.01% | 41.99% |
| Tropical Japonica | 83 | 74.70% | 25.30% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125017448 | G->A | LOC_Os11g42320(LOC_Os11g42320.1) | Non-Synonymous SNP |