Detailed information of SNP:
|
SNP ID:
sf1125019817(Gbrowse)
Chromosome: chr11 Position: 25019817 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 96.19% | 3.81% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 470 | 90.00% | 10.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 312 | 86.54% | 13.46% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125019817 | C->T | LOC_Os11g42320(LOC_Os11g42320.1) | Synonymous |