Detailed information of SNP:
|
SNP ID:
sf1125026648(Gbrowse)
Chromosome: chr11 Position: 25026648 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 76.29% | 23.71% |
| All Indica | 798 | 66.92% | 33.08% |
| All Japonica | 496 | 90.73% | 9.27% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125026648 | G->A | LOC_Os11g42350(LOC_Os11g42350.3) | INTRON |
| sf1125026648 | G->A | LOC_Os11g42350(LOC_Os11g42350.2) | INTRON |
| sf1125026648 | G->A | LOC_Os11g42350(LOC_Os11g42350.1) | INTRON |